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The two most important sequences are the expression cassette and the selection marker.

The expression cassette contains a promoter and termination sequence, with a multiple cloning site sandwiched in between. It is the section of the plasmid that integrates into the genome of the target organism. The gene of interest is cloned into the multiple cloning site by digesting both plasmid and gene fragment with restriction enzymes that produce complementary ends. Once the plasmid has been transferred into the target organism the promoter sequence determines when the gene is transcribed. Some promoters are always active (Cauliflower Mosaic Virus 35S is most common) and others are developmentally or environmentally regulated, so that the gene is only expressed at specific times. The termination sequence determines where transcription stops.

The selection marker is used to determine which organisms are carrying the gene of interest. It usually contains a promoter, resistance gene and termination sequence and forms part of the expression cassette. In most cases antibiotic resistance is used as selection. For example the nptII gene encodes for kanamycin resistance.

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Q: What are two important sequences on a plasmid?
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This is an artificial genetic sequence from combining two other sequences in a plasmid?

Recombinant DNA


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When the original function of the gene in the plasmid is altered or another gene is inserted in the non- coding region of the plasmid is called the recombinant plasmid.


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If the plasmid has 3 recognition sequences for a given restriction endonuclease, then 4 linear DNA fragments are obtained because, if the DNA is linear then the number of fragments obtained is (N+1) whereas if the DNA is circular then the number of fragments obtained will be N for N recognition sequences for the given restriction endonuclease in a plasmid.


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