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There is no formula for that. It can be any height. The fact that it is hexagonal has nothing to do with it.
A hexagon is a 2-dimensional shape. A "structure" implies a 3-dimensional shape but you have not specified whether it is a hexagonal pyramid, a hexagonal prism or some other shape that is [partly] based on a hexagon. Without that information it is not possible to give a more helpful answer.
Graphite is an example of a hexagonal crystal. Beryl also forms a six sided crystal.Magnesium exhibits close packed hexagonal crystal structure.
A hexagonal pyramid.A hexagonal pyramid.A hexagonal pyramid.A hexagonal pyramid.
It is not.