Hamiltonian equations are a representation of Hamiltonian mechanics. Please see the link.
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The word canonical means "by a general law, rule, principle or criterion". When the Hamiltonian operator is applied to the (average momentum) wave function it gives quantized values. In this sense the Hamilton equations gives the Schrodinger equation discreet values by a general law.
The total energy of the system simply described in classical mechanics called as Hamiltonian.
The hamiltonian operator is the observable corresponding to the total energy of the system. As with all observables it is given by a hermitian or self adjoint operator. This is true whether the hamiltonian is limited to momentum or contains potential.
All the optimization problems in Computer Science have a predecessor analogue in continuous domain and they are generally expressed in the form of either functional differential equation or partial differential equation. A classic example is the Hamiltonian Jacobi Bellman equation which is the precursor of Bellman Ford algorithm in CS.
Equivalent equations are equations that have the same solution set.